Session – SC18

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Workshop

: Fourth Computational Approaches for Cancer Workshop (CAFCW18)

Session Chairs

Patricia Kovatch

Icahn School of Medicine at Mount Sinai

MD Anderson Cancer Center

University of Texas

Nationwide Children's Hospital

Event Type

Workshop

Tags

Registration Categories

TimeSunday, November 11th9:00am - 5:30pm CST

LocationD165

Presentations

9:00am - 9:10am CST	Introduction – Fourth Computational Approaches for Cancer Workshop (CAFCW18) Organizers Eric Stahlberg Patricia Kovatch Thomas Barr Sunita Chandrasekaran
9:10am - 10:00am CST	Morning Keynote – Computational Approaches in Clinical Applications Presenter Ketan Paranjape
10:00am - 10:30am CST	Workshop Morning Break
10:30am - 11:00am CST	Developing a Reproducible WDL-Based Workflow for RNASeq Data Using Modular, Software Engineering-Based Approaches Author/Presenters Scott Cukras Fredrik Pettersson Yonghong Zhang Ling Cen Jamie Teer Steven Eschrich
11:00am - 11:15am CST	Safety, Reproducibility, Performance: Accelerating Cancer Drug Discovery with Cloud, ML, and HPC Technologies Author/Presenter Amanda J. Minnich
11:15am - 11:45am CST	The Gen3 Approach to Portability and Repeatability for Cancer Genomics Projects Author/Presenters Zac Flamig Yajing Tang Robert L. Grossman
11:45am - 12:00pm CST	Scalable Deep Ensemble Learning for Cancer Drug Discovery Author/Presenters Sam Ade Jacobs Tim Moon Brian C. Van Essen
12:00pm - 12:30pm CST	Panel Discussion: Reproducibility and Accessibility - Challenges and Opportunities
12:30pm - 2:00pm CST	Workshop Lunch (on your own)
2:00pm - 3:00pm CST	Afternoon Keynote – Genomic Profiling of Normal, Premalignant, and Heterogeneous Tissues in Cancer Patients Presenter Paul Scheet
3:00pm - 3:30pm CST	Workshop Afternoon Break
3:30pm - 4:00pm CST	HPC-Based Hyperparameter Search of MT-CNN for Information Extraction from Cancer Pathology Reports Author/Presenters Hong-Jun Yoon Mohammed Alawad Blair Christian Jacob Hinkle Arvind Ramanathan Georgia Tourassi
4:00pm - 4:15pm CST	Toward a Computational Simulation of Circulating Tumor Cell Transport in Vascular Geometries Author/Presenters John Gounley Erik W. Draeger Amanda Randles
4:15pm - 4:45pm CST	Hummingbird: Efficient Performance Prediction for Executing Genomics Applications in the Cloud Author/Presenters Utsab Ray Frank Mueller Amir Bahmani Vandhana Krishnan
4:45pm - 5:00pm CST	Toward a Pre-Cancer Image Atlas through Crowdsourcing and Machine Learning Author/Presenters Ashish Mahabal David Liu Luca Cinquini Daniel Crichton Heather Kincaid Sean Kelly Kristen Anton Maureen Colbert Christopher Amos Matthew Schabath Christos Patriotis Sudhir Srivastava
5:00pm - 5:30pm CST	Extending Frontiers for Computing in Cancer – Special Session